Package: dbpq 0.0.0.9000

dbpq: Manage FASTA Reference Databases for Taxonomic Assignment

Download, format, summarize, and modify FASTA reference databases used for taxonomic assignment in metabarcoding pipelines. Supports major databases (UNITE, SILVA, PR2, BOLD, MaarjAM, Eukaryome) and converts between taxonomy header formats (dada2, SINTAX). Part of the 'pqverse' ecosystem.

Authors:Adrien Taudière [aut, cre, cph]

dbpq_0.0.0.9000.tar.gz
dbpq_0.0.0.9000.zip(r-4.7)dbpq_0.0.0.9000.zip(r-4.6)dbpq_0.0.0.9000.zip(r-4.5)
dbpq_0.0.0.9000.tgz(r-4.6-any)dbpq_0.0.0.9000.tgz(r-4.5-any)
dbpq_0.0.0.9000.tar.gz(r-4.7-any)dbpq_0.0.0.9000.tar.gz(r-4.6-any)
dbpq_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dbpq/json (API)
NEWS

# Install 'dbpq' in R:
install.packages('dbpq', repos = c('https://adrientaudiere.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/adrientaudiere/dbpq/issues

On CRAN:

Conda:

1.00 score 1 scripts 16 exports 27 dependencies

Last updated from:9ddef4490b. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE202
source / vignettesOK215
linux-release-x86_64NOTE195
macos-release-arm64NOTE112
macos-oldrel-arm64NOTE108
windows-develNOTE136
windows-releaseNOTE155
windows-oldrelNOTE240
wasm-releaseOK140

Exports:count_pattern_dbcount_seq_dbcutadapt_rm_primers_dbdownload_bold_dbdownload_eukaryome_dbdownload_marjaam_dbdownload_pr2_dbdownload_silva_dbdownload_unite_dbfilter_dbformat2dada2format2dada2_speciesformat2sintaxget_file_extensionlist_ranks_dbsummarize_db

Dependencies:BiocGenericsBiostringsclicpp11crayondplyrgenericsglueIRangeslifecyclemagrittrpillarpkgconfigpurrrR6rlangS4VectorsSeqinfostringistringrtibbletidyrtidyselectutf8vctrswithrXVector