Type: Package
Package: taxinfo
Title: Augment 'Phyloseq' Objects with Taxonomy-Based Information
Version: 0.3.0.9000
Authors@R: 
    person("Adrien", "Taudiere", , "adrien.taudiere@zaclys.net", role = c("aut", "cre", "cph"))
Description: Augments 'phyloseq' objects with taxonomy-based
        information retrieved from multiple external data sources.
        Provides functions to query 'GBIF' (Global Biodiversity
        Information Facility), 'Wikipedia', 'GLOBI' (Global Biotic
        Interactions), 'OpenAlex', and other databases to verify
        taxonomic names, retrieve occurrence data, access species
        interaction networks, and fetch scientific literature metadata.
        Designed to work with the 'phyloseq' data structure common in
        metabarcoding analyses. Most functions support both 'phyloseq'
        objects and plain taxonomic name vectors as input.
License: AGPL-3
URL: https://adrientaudiere.github.io/taxinfo/,
        https://adrientaudiere.github.io/taxinfo
BugReports: https://github.com/adrientaudiere/taxinfo/issues
Depends: MiscMetabar, R (>= 4.1.0)
Imports: cli, dplyr, ggplot2, httr, jsonlite, lifecycle, methods,
        phyloseq, purrr, rgbif, rglobi, sf, stats, stringr, taxize,
        tibble, tidyr, tools, utils
Suggests: BioShiftR, CoordinateCleaner, DECIPHER, digest, duckdb,
        elevatr, forcats, gbif.range, ggforce, ggpmisc, ggrepel,
        ggtext, ggraph, ggstatsplot, ggVennDiagram, ggtree, htmltools,
        igraph, knitr, leaflet, leafpop, maps, mapview, openalexR,
        patchwork, rentrez, rmarkdown, rnaturalearth, rvest,
        systemfonts, terra, testthat (>= 3.0.0), vcr (>= 1.0.0),
        wikitaxa
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libglpk-dev make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev libx11-dev xz-utils zlib1g-dev
Repository: https://adrientaudiere.r-universe.dev
Date/Publication: 2026-07-07 20:12:26 UTC
RemoteUrl: https://github.com/adrientaudiere/taxinfo
RemoteRef: HEAD
RemoteSha: 9f7bd99d520d3e017b090f96efc36e86e3aa3960
NeedsCompilation: no
Packaged: 2026-10-08 07:51:19 UTC; root
Author: Adrien Taudiere [aut, cre, cph]
Maintainer: Adrien Taudiere <adrien.taudiere@zaclys.net>