Package: dbpq
Title: Manage FASTA Reference Databases for Taxonomic Assignment
Version: 0.1.0.9000
Authors@R: 
    person("Adrien", "Taudière", , "adrien.taudiere@zaclys.net", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-1088-1182"))
Description: Download, format, summarize, and modify FASTA reference
        databases used for taxonomic assignment in metabarcoding
        pipelines. Supports major databases ('UNITE', 'SILVA', 'PR2',
        'Greengenes2', 'RDP', 'MIDORI2', 'BOLD', 'Diat.barcode',
        'MaarjAM', 'Eukaryome') and converts between taxonomy header
        formats ('dada2', 'SINTAX', 'Greengenes2'). Part of the
        'pqverse' ecosystem.
License: AGPL-3
URL: https://github.com/adrientaudiere/dbpq,
        https://adrientaudiere.github.io/dbpq/
BugReports: https://github.com/adrientaudiere/dbpq/issues
Depends: R (>= 4.1.0)
Imports: Biostrings, cli, methods, dplyr, jsonlite, lifecycle, purrr,
        rlang, stringr, tibble, tidyr, tools, utils
Suggests: ComplexUpset, dada2, ggplot2, ggVennDiagram, knitr,
        MiscMetabar, phyloseq, rmarkdown, R.utils, testthat (>= 3.0.0),
        visNetwork
Remotes: krassowski/complex-upset
VignetteBuilder: knitr
RdMacros: lifecycle
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://adrientaudiere.r-universe.dev
Date/Publication: 2026-07-07 20:01:37 UTC
RemoteUrl: https://github.com/adrientaudiere/dbpq
RemoteRef: HEAD
RemoteSha: 3483ddfea241e5dc25fcebcdfe550a0abebd988d
NeedsCompilation: no
Packaged: 2026-10-05 10:56:41 UTC; root
Author: Adrien Taudière [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-1088-1182>)
Maintainer: Adrien Taudière <adrien.taudiere@zaclys.net>