Package: comparpq
Type: Package
Title: Compare and Analyse Multiple 'phyloseq' Objects
Version: 0.2.1
Authors@R: person("Adrien", "Taudière", email = "adrien.taudiere@zaclys.net",
  role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0003-1088-1182"))
Description: Compare and analyse multiple 'phyloseq' objects from the
        'R' 'phyloseq' package. Provides tools for taxonomic
        comparison, accuracy metrics computation (confusion matrix
        approach with FDR, TPR, F1 score, and MCC), and visualizations
        including bubble plots, Venn diagrams, and diversity estimation
        across groups of microbiome datasets.
License: AGPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.1.0), MiscMetabar, phyloseq, S7
Imports: ape, Biostrings, circlize, cli, dplyr, ggalluvial, ggplot2,
        ggtree, kmer, lifecycle, maaslin3, MIDASim, multcompView,
        purrr, rlang, scales, tibble, tidyr, vegan, formattable
URL: https://github.com/adrientaudiere/comparpq,
        https://adrientaudiere.github.io/comparpq/
BugReports: https://github.com/adrientaudiere/comparpq/issues
Suggests: ALDEx2, BiocParallel, divent, ANCOMBC, ComplexUpset, dabestr,
        DESeq2, devtools, edgeR, testthat (>= 3.0.0), ggrain,
        indicspecies, ggtext, ggVennDiagram, limma, mia, patchwork,
        gtsummary, radEmu, robservable, knitr, permute, rmarkdown,
        MicrobiomeBenchmarkData, packcircles, ggforce, RColorBrewer
LazyData: true
Config/testthat/edition: 3
Config/testthat/parallel: true
VignetteBuilder: knitr
Language: en-US
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://adrientaudiere.r-universe.dev
Date/Publication: 2026-06-22 14:37:43 UTC
RemoteUrl: https://github.com/adrientaudiere/comparpq
RemoteRef: HEAD
RemoteSha: c42519a888e1b2cddad49c975b7fe60ab01ee18e
NeedsCompilation: no
Packaged: 2026-06-22 15:36:56 UTC; root
Author: Adrien Taudière [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-1088-1182>)
Maintainer: Adrien Taudière <adrien.taudiere@zaclys.net>